Re: [galaxy-dev] Wiki documentation for tool_dependencies.xml file

[Nicola Soranzo]

  Hi Peter,
the page you are looking for
is:

https://wiki.galaxyproject.org/ToolDependenciesTagSets

I think it
should be better linked, I had to bookmark it!

Cheers,
Nicola

Il
02.09.2015 12:33 Peter Cock ha scritto: 

> Hi all,
> 
> Is there a page
on the wiki describing the tool_dependencies.xml file syntax?
>
Searching finds pages with examples, e.g.
> 
>
https://wiki.galaxyproject.org/ToolsWithDependenciesInSameRepository
[1]
> https://wiki.galaxyproject.org/ComplexRepositoryDependencies [2]
>

> What I am looking for is something like the wiki page for the tool
XML:
> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax [3]
>

> This missing page should do things like list all the XML tags, for
example
> showing all the permitted actions in tool_dependencies.xml?
>

> What are the pre-defined environment variables like $INSTALL_DIR,
>
and my specific question today - does that have a trailing slash or
not?
> 
> Peter
>
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Re: [galaxy-dev] Wiki documentation for tool_dependencies.xml file

[Peter Cock]

Lovely, thanks! I've added a couple of links pointing to that page :)

It does list a few of relevant environment variables, $INSTALL_DIR,
$REPOSITORY_INSTALL_DIR and $TMP_WORK_DIR, but does
not comment on if these directory names include a trailing slash
or not...

Peter

On Wed, Sep 2, 2015 at 12:12 PM, Nicola Soranzo  wrote:
> Hi Peter,
> the page you are looking for is:
>
> https://wiki.galaxyproject.org/ToolDependenciesTagSets
>
> I think it should be better linked, I had to bookmark it!
>
> Cheers,
> Nicola
>
> Il 02.09.2015 12:33 Peter Cock ha scritto:
>
>> Hi all,
>>
>> Is there a page on the wiki describing the tool_dependencies.xml file
>> syntax?
>> Searching finds pages with examples, e.g.
>>
>> https://wiki.galaxyproject.org/ToolsWithDependenciesInSameRepository
>> https://wiki.galaxyproject.org/ComplexRepositoryDependencies
>>
>> What I am looking for is something like the wiki page for the tool XML:
>> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax
>>
>> This missing page should do things like list all the XML tags, for example
>> showing all the permitted actions in tool_dependencies.xml?
>>
>> What are the pre-defined environment variables like $INSTALL_DIR,
>> and my specific question today - does that have a trailing slash or not?
>>
>> Peter
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