Re: [galaxy-dev] custom java tools.xml : problem with classpath

2015-02-26 Thread Peter Cock
On Thu, Feb 26, 2015 at 2:43 PM, John Chilton jmchil...@gmail.com wrote: Also not need to escape $__tool_directory__ (so use $__tool_directory__ instead of \$__tool_directory__). -John If this was unclear, $VAR in the command XML fragment is taken to be a Python variable available within

Re: [galaxy-dev] custom java tools.xml : problem with classpath

2015-02-26 Thread Pierre Lindenbaum
On 02/26/2015 03:43 PM, John Chilton wrote: Sorry I wasn't clear about that - it hasn't reached galaxy-dist yet - you can download the latest snapshot of 15.03 release (I believe it is running on usegalaxy.org as of yesterday) via this link instead

Re: [galaxy-dev] custom java tools.xml : problem with classpath

2015-02-26 Thread Pierre Lindenbaum
On 02/26/2015 04:20 PM, John Chilton wrote: Well - this version does feature Sam's complete rewrite of the front end for tools - so things will be pretty different. Oddly though your tool loaded for me - can you open up your JavaScript console and let me know if there are any errors? my bad,