Hi Rebecca, You are almost certainly using the Huttenhower lab Galaxy instance (http://huttenhower.sph.harvard.edu/galaxy/). I've CC's Curtis who can hopefully direct you toward a solution.
Thanks, James On Wed, Jun 3, 2015 at 8:05 PM, Rebecca Prescott <rebec...@hawaii.edu> wrote: > Hello! > > I am a new user of Galaxy, I believe I am working on the MAIN (although I am > not sure). I would like to use the PICRUSt tool on Galaxy through the web. > I have created an account, but I did not download Galaxy. > > I uploaded two .biom files generated in QIIME (see attached). The > Greengenes reference database that was used to generate these OTU tables is > greengenes/gg_12_10 version. On the web-based PICRUSt tool in Galaxy, I > selected the only other option than the current Greengenes database, which > is listed as May18 2012. > > When I try to run normalize_by_copy_number.py I get the following error > return for both files: > > Traceback (most recent call last): File > "/net/rcstore02/ifs/rc_labs/galaxy/www/galaxy_hutlab14/galaxy-hutlab14-20150109/tools/picrust_galaxy/scripts/normalize_by_copy_number.py", > line 146, in <module> main() File “/net/rcstore02/ifs/rc_labs/galax > > I am at a loss as to what this error term means. I suspect it is a format > issue? But not sure what the issue is or how to fix it. Or that I am using > the gg_12_10 version? > > Cheers > Becks > > Rebecca Prescott, Ph.D > University of Hawaii Manoa > Department of Microbiology > 2538 McCarthy Mall > Honolulu, HI 96822 > > > > > > > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
