Re: [galaxy-dev] flexbar v2.7 & required format extension

2016-06-18 Thread Nikolaos Tur
thanx Mina, I thought about this. If no one still did this, question is where to add soft link creation. Probably in flexbar.xml. Now flexbar supports fasta and fastaq format, also their gziped/bziped versions. How to determine data format in Galaxy? I'm not an expert neither in Galaxy nor

Re: [galaxy-dev] flexbar v2.7 & required format extension

2016-06-18 Thread Mina Bashir
Hi, You can solve the extension issue using soft links in your tool wrapper. E.g.: ln -s $input_fasta $input_fasta.fna Best, Mina Sent from my iPhone > On Jun 18, 2016, at 12:04, Nikolaos Tur wrote: > > Hi, > > does someone use latest version of flexbar 2.7 with