Re: [galaxy-dev] need help badly

2015-09-17 Thread Suderman Keith
the directory so when a torque slave writes inside the > directory, the master is already inside? > > > > Cordialement / Regards, > > Edgar Fernandez > > > > De : Josh Woodring [mailto:woodring.jos...@gmail.com] > Envoyé : September-17-15 11:14 AM > À : F

Re: [galaxy-dev] need help badly

2015-09-17 Thread Fernandez Edgar
dring.jos...@gmail.com] Envoyé : September-17-15 12:34 PM À : Fernandez Edgar Cc : galaxy-...@bx.psu.edu Objet : Re: [galaxy-dev] need help badly Hi Edgar, Hm, I haven't gotten it to work but galaxy is supposed to support looking in the working directory for the file. Its likely for reasons s

Re: [galaxy-dev] need help badly

2015-09-17 Thread Josh Woodring
> directory and enter the directory so when a torque slave writes inside the > directory, the master is already inside? > > > > Cordialement / Regards, > > Edgar Fernandez > > > > *De :* Josh Woodring [mailto:woodring.jos...@gmail.com] > *Envoyé :* September-17-15

Re: [galaxy-dev] need help badly

2015-09-17 Thread Josh Woodring
Hi Edgar, I am a pretty big newbie to Galaxy but I have had similar problems on my Dev build with grabbing outputs from the working directories. Its a temporary fix but I have put routines in a bash wrapper that uses a working directory that I made and know. If your cluster has access to a shared

Re: [galaxy-dev] need help badly

2015-09-17 Thread Fernandez Edgar
De : Josh Woodring [mailto:woodring.jos...@gmail.com] Envoyé : September-17-15 11:14 AM À : Fernandez Edgar Cc : galaxy-...@bx.psu.edu Objet : Re: [galaxy-dev] need help badly Hi Edgar, I am a pretty big newbie to Galaxy but I have had similar problems on my Dev build with grabbing outputs from the

Re: [galaxy-dev] need help badly

2015-09-17 Thread Fernandez Edgar
Hello gents, I figured out something: it has nothing to do with galaxy but maybe one of you could explain me why I'm having this behavior : I connect ssh on the torque master (where the galaxy web service is running) and: 1. su - galaxy 2. cd /home/galaxy/galaxy-prod/database/job_w