Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-20 Thread Sarah DIEHL
;galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>" <galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>> Subject: Re: [galaxy-dev] recurring issues with revisions of packages from toolshed Sorry to hijack the threa

Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-20 Thread Marius van den Beek
Sorry to hijack the thread, but I think the issue that Sarah has described could be related to https://github.com/galaxyproject/galaxy/issues/667. (I know it's not exactly the same, but chances are we fix this, we automatically fix Sarah's issue.) There is also an example to reproduce

Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-19 Thread Björn Grüning
Hi Sarah, can you create a reproducible example in a Docker container for me? Together with a friend I will have a look at this. But we need to short reproducible example :) Thanks, Bjoern > Dear all, > > I continuously have several issues with tool dependency packages from > the toolshed and

Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-17 Thread Björn Grüning
:christian.brenninkmei...@manchester.ac.uk>> > > Date: Thursday 15 October 2015 11:43 > To: Sarah DIEHL <sarah.di...@uni.lu<mailto:sarah.di...@uni.lu>>, > "galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>" > <galaxy-dev@

Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-17 Thread Björn Grüning
> Christian > > > From: Björn Grüning [bjoern.gruen...@gmail.com] > Sent: Thursday, October 15, 2015 10:48 AM > To: Christian Brenninkmeijer; Sarah DIEHL; galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] recurring issues with

Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-15 Thread Sarah DIEHL
ot; <galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>> Subject: RE: [galaxy-dev] recurring issues with revisions of packages from toolshed Note these are personal views of another admin not official Galaxy views. The version issues is a hard one to solve

Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-15 Thread Christian Brenninkmeijer
ian Brenninkmeijer; Sarah DIEHL; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] recurring issues with revisions of packages from toolshed Am 15.10.2015 um 11:43 schrieb Christian Brenninkmeijer: > Note these are personal views of another admin not official Galaxy views. > > The ve

Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-15 Thread Björn Grüning
Am 15.10.2015 um 11:43 schrieb Christian Brenninkmeijer: > Note these are personal views of another admin not official Galaxy views. > > The version issues is a hard one to solve, as automatically updating upstream > project is also dangerous as that leaves them in a state that has not be >

Re: [galaxy-dev] recurring issues with revisions of packages from toolshed

2015-10-15 Thread Christian Brenninkmeijer
Note these are personal views of another admin not official Galaxy views. The version issues is a hard one to solve, as automatically updating upstream project is also dangerous as that leaves them in a state that has not be verified by the developer. Best solution could be for the toolshed to