Re: [galaxy-user] generating a new fasta from a pileup

I have some code which can do most of the requested things. Let me figure out how to galaxy around it, and I'll submit it. John Sent from my mobile device On 2011-07-30, at 12:47 AM, Jennifer Jackson j...@bx.psu.edu wrote: Hello David, Generating a consensus fasta sequence from a BAM or

Re: [galaxy-user] filtering fastq file according to qual score

Hi Haluk, By filtering, you mean removing reads? trimming their ends? or masking some of their bases? There are 3 tools under Generic FASTQ manipulation that may help you: Filter FASTQ reads by quality score and length FASTQ Quality Trimmer by sliding window FASTQ Masker by quality