Re: [galaxy-user] Identification of replicate outlier

2012-11-09 Thread Dave Corney
cluster well with the other members of their tribe On Fri, Nov 9, 2012 at 10:22 AM, Dave Corney dcor...@princeton.edu wrote: Hello list, I've been analyzing an experiment with two groups each with three replicates. My workflow was TopHat (paired end) - Cufflinks - CuffDiff. Unfortunately

[galaxy-user] Identification of replicate outlier

2012-11-08 Thread Dave Corney
Hello list, I've been analyzing an experiment with two groups each with three replicates. My workflow was TopHat (paired end) - Cufflinks - CuffDiff. Unfortunately, there are not many significant differences identified by CuffDiff. I am wondering whether one of my replicates might be an outlier.

Re: [galaxy-user] Export to file

2012-10-22 Thread Dave Corney
jeremy.goe...@emory.eduwrote: I've reworked the code to handle large history export files in -central changeset afc8e9345268., and this should solve your issue. This change should make it out to our public server this coming week. Best, J. On Oct 18, 2012, at 12:36 PM, Dave Corney wrote: Hi Jeremy

Re: [galaxy-user] Export to file

2012-10-18 Thread Dave Corney
%20Files Take care, Jen Galaxy team On 10/17/12 3:21 PM, Dave Corney wrote: Hi Jen, Thanks for your response and suggestion. Just so that it is clear, for your second method, where I export to file and then use curl, I will download to my computer as an intermediate stage

[galaxy-user] Export to file

2012-10-17 Thread Dave Corney
Hi list, Is there a currently a known problem with the export to file function? I'm trying to migrate some data from the public galaxy to a private one; the export function worked well with a small (~100mb) dataset, but it has not been working with larger datasets (2GB) and I get the error: