Hi,
I have been trying to get reference data from the ucsc browser into Galaxy, but
when I try to get the rat genome in gtf format, I only get files halfway
through chomosome 10. This happens with both of the available builds for the
rat. I am guessing this is a problem with the UCSC files a
Rory Kirchner
Cc: Martin, David A.; galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] Galaxy for gene expression comparison
>
> > I have patched galaxy to have cuffdiff handle replicates and to do
> normalization, when that gets merged into the main branch your workflow will
> be
Sent: Tue 1/18/2011 9:29 PM
To: Martin, David A.
Cc: eaf...@emory.edu; galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] Galaxy for gene expression comparison
> I am comparing RNA expression in two groups of rats, a drug treated group
> against a control group. There are 10 biological re
Hello,
I am comparing RNA expression in two groups of rats, a drug treated group
against a control group. There are 10 biological replicates in each group. I
am unsure of how to flow this analysis through Galaxy using Tophat followed by
Cufflinks/compare/diff. Should the files for each group
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