Re: [galaxy-user] Bisulfite seq

2014-02-14 Thread Björn Grüning
Hi Mathew, I have a mapper (bismark) and my own tools (+wrapper) and was able to do an entire analysis with it. The bismark wrapper is in the toolshed. The other tools can be found in my github repository. https://github.com/bgruening galaxytools and methtools Hope that helps, Bjoern Do we

[galaxy-user] Bisulfite seq

2014-02-13 Thread Mathew Bunj
Do we have any tool which can be used for analyzing and QC check for bisulfite sequencing. I have FASTq files. Thanks Mathew___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public