[galaxy-user] Galaxy test won't run a bwa job

2011-11-22 Thread Carlos Borroto
Hi, I'm trying to test a workflow using tools only available on the test server, for this I have uploaded a limited subset of my data that should run fairly quickly. The first step is a BWA mapping, but the job has being in the queue since yesterday. Is it fine to run this kind of test there?

Re: [galaxy-user] Galaxy test won't run a bwa job

2011-11-22 Thread Carlos Borroto
Hi Jen, I did as you recommended a rerun my job, but after 2hrs is still waiting. This is my history if that helps: http://test.g2.bx.psu.edu/u/cjav/h/gatk---hg19---example Regards, Carlos On Tue, Nov 22, 2011 at 12:30 PM, Jennifer Jackson j...@bx.psu.edu wrote: Hello Carlos, The NGS

Re: [galaxy-user] Galaxy test won't run a bwa job

2011-11-22 Thread Mike Dufault
just copy the http:. I hope this helps, Mike --- On Tue, 11/22/11, Carlos Borroto carlos.borr...@gmail.com wrote: From: Carlos Borroto carlos.borr...@gmail.com Subject: Re: [galaxy-user] Galaxy test won't run a bwa job To: Jennifer Jackson j...@bx.psu.edu Cc: galaxy-user@lists.bx.psu.edu Date

Re: [galaxy-user] Galaxy test won't run a bwa job

2011-11-22 Thread Carlos Borroto
: [galaxy-user] Galaxy test won't run a bwa job To: Jennifer Jackson j...@bx.psu.edu Cc: galaxy-user@lists.bx.psu.edu Date: Tuesday, November 22, 2011, 3:12 PM Hi Jen, I did as you recommended a rerun my job, but after 2hrs is still waiting. This is my history if that helps: http://test.g2