Dear All I have combined H3K4me3 pattern in a specific region (Info: UCSC Main on Human: wgEncodeBroadHistoneGm12878CtcfStdPk (genome)) with RefSeq genes in that region (CSC Main on Human: refGene (genome)) and get this pdf histogram. I was wondering if someone help me on interpretation of it.
Best regards. Moein M.Farshchian Ph.D Candidate of Cell & Molecular Biology, Department of Biology, Faculty of Sciences, Ferdowsi University of Mashhad. Mashhad.Iran. P.O.Box: 9177948974 ________________________________ From: Peter Cock <p.j.a.c...@googlemail.com> To: Jeremy Goecks <jeremy.goe...@emory.edu> Cc: galaxy-user@lists.bx.psu.edu Sent: Fri, April 15, 2011 12:55:49 PM Subject: Re: [galaxy-user] Nucleotide analysis - GC percentage On Thu, Apr 14, 2011 at 6:25 PM, Jeremy Goecks <jeremy.goe...@emory.edu> wrote: >> Now why does a tool search on the public Galaxy instance for GC >> not suggest this tool? >> >> Name: geecee >> Description: Calculates fractional GC content of nucleic acid sequences >> >> Does this mean the description isn't searched? It would seem like >> a sensible idea to me to include that... >> >> Searching for "geecee" works, but unless you're familiar with this >> EMBOSS tool no-one will think of that. > > > Peter, > > The tool search doesn't start until you type in three characters, > so typing 'GC' does not initiate a search. Typing 'gc<space' or > 'gc content' works. Perhaps a tooltip or help text is needed. > > J. I see that now, and yes, perhaps a caption on the search box would help... Also typing C, C, enter doesn't work - that does surprise me. There is still something amiss with the search apparently not using the tool description line, for instance neither "acid" nor "nucleic" nor "factional" show the EMBOSS geecee tool. If the search is indexing on the tool's main help text, then for the EMBOSS tools it would help to have an executive summary with key words in it, rather than just a link to the EMBOSS webpage for each tool. Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Galaxy7-[Histogram_on_data_6].pdf
Description: Adobe PDF document
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
