Dear Glaxy users and admin
I ran my sequence data on FASTQC tool,
output says it is
EncodingSanger / Illumina 1.9
now i want to groom my file, but groomer does not have option for 1.9 in Input
FASTQ quality scores type
any idea which option i should select to grroom my file,
later i
Hello,
The input quality score type should be set as Sanger for your data.
Thanks!
Jen
Galaxy team
On 2/29/12 7:39 AM, Ateequr Rehman wrote:
Dear Glaxy users and admin
I ran my sequence data on FASTQC tool,
output says it is
Encoding Sanger / Illumina 1.9
now i want to groom my file, but
Hi Jen,
I have a related question. If Illumina 1.9 is already in Sanger
format, is it still necessary to groom the FASTQ files for TopHat?
Would it be enough to directly change the data type to Sanger without
grooming?
Thanks,
Carlos
On Wed, Feb 29, 2012 at 10:57 AM, Jennifer Jackson
Rehman atee...@yahoo.com
*Cc:* galaxy-user@lists.bx.psu.edu galaxy-user@lists.bx.psu.edu
*Sent:* Wednesday, February 29, 2012 10:57 AM
*Subject:* Re: [galaxy-user] ILLumina 1.9 Hiseq
Hello,
The input quality score type should be set as Sanger for your data.
Thanks!
Jen
Galaxy team
On 2/29/12 7
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