Hello Matt,
If you are using the public Main Galaxy instance or a Cloud Galaxy AMI,
the genome should be available. But on a local instance, reference
genomes need to be set up. These are the instructions:
http://wiki.galaxyproject.org/Admin/Data%20Integration
Hi I'm currently using the Galaxy pipeline to analyze my illumina chip-seq
data. When I try to use NGA: MappingMap with Bowtie for Illumina to map my
reads there is no rat reference genome. I says I should contact galaxy.
Should I simply upload the genome to proceed with analysis?
Thanks
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