[galaxy-user] Fwd: Question about FTP

- Forwarded message from Noushin Ghaffari noushin.ghaff...@gmail.com - Date: Mon, 7 Mar 2011 09:09:13 -0600 From: Noushin Ghaffari noushin.ghaff...@gmail.com To: dbad...@bio.cse.psu.edu Subject: Question about FTP Dear Galaxy team, Firstly, thank you very much for the great tools. I am

[galaxy-user] BED-to-GFF: option for gff3 format

Hi Galaxy developers, Any plans on adding a gff3 format option to BED-to-GFF? I found a BED-to-GFF3 converter at the Rätsch lab's instance of Galaxy (http://galaxy.tuebingen.mpg.de/). Any plans on making this converter more widely available? Karen :) Dept of Plant Biology University of

Re: [galaxy-user] GTF-to-GFF3

Hi Galaxy developers, Any plans on adding a GTF-to-GFF3 format conversion? This converter is at the Rätsch lab's instance of Galaxy (http://galaxy.tuebingen.mpg.de/). Could it be made more widely available? Karen :) Dept of Plant Biology University of

[galaxy-user] Bowtie Job doesn't start

Hi, just trying to use Bowtie, but the job does not start. Is there somthing wrong with the server at the moment? Felix ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at

[galaxy-user] irc channel for galaxy

Hey guys, Is there an irc channel for galaxy? I googled for galaxy irc but all I see in the first fifty results are entries for the samsung galaxy (which is an excellent phone ;) Best Regards, George Marselis, systems administrator Building #2, Level 4, room 4327 Computational Bioscience

Re: [galaxy-user] Fwd: Need a generous help regarding uploading

Hi Vasu, Very sorry to hear that you are still having problems. Have you been able to do the update? It was not clear from your email. The latest is: http://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy new: % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist upgrade: % hg pull

Re: [galaxy-user] Bowtie Job doesn't start

Felix Hammer wrote: Hi, just trying to use Bowtie, but the job does not start. Is there somthing wrong with the server at the moment? Hi Felix, It looks like the reservation on the cluster which runs bowtie jobs isn't working at the moment and there's some contention for resources. I've

Re: [galaxy-user] Adding the Hydra genome to Galaxy

Thanks Rob, This definitely helps - we appreciate the additional info. This is on our high-priority list and Kelly will get back to you if we have more questions. Best, Jen On 3/7/11 1:23 PM, Rob Steele wrote: Hi Jen, The easiest way to refer to this genome would be Hydra_JCVI. This way