Hi Norbert,
please have a look at the FTP-Upload feature from galaxy.
The idea is that every user gets an FTP folder in which he can upload
data. If you create such a directory you can probably link your data in
such directories and galaxy will offer them to the users in the upload
tool.
Hope
Hi Antony,
Jobs are sent to different clusters by type, so it is not unusual to see
some jobs complete quickly while others take longer. Jobs on the NGS
cluster (where Bowtie and BWA would be run) are processing as normal,
but Galaxy was very busy over the weekend and continues to be busy
On Jun 25, 2012, at 2:49 AM, Björn Grüning wrote:
Hi Norbert,
please have a look at the FTP-Upload feature from galaxy.
The idea is that every user gets an FTP folder in which he can upload
data. If you create such a directory you can probably link your data in
such directories and galaxy
Hi,
What I did was to create a directory with sub-directories for each user
or data set. Then you can change the universe_wsgi_ini in line 375 and put
your directory path there
library_import_dir=your path
Then as admin you can upload the files from the directory, actually you
create a link
On Jun 25, 2012, at 1:53 PM, Shanshan Pang wrote:
Hi, I am in the step map with bowtie with a status of JOB IS WAITING TO RUN
for two days. I tried to re-run it, but did not work. So any suggestions on
it?
Thanks!
Hi Shanshan,
The cluster used to run mapping and other NGS tools is very
Hello Lilach,
Currently, the human reference genome indexed for the GATK-beta tools is
'hg_g1k_v37'. The GATK-beta tools are under active revision by our team,
so we expect there to be little to no change to the beta version on the
main public instance until this is completed.
Attempting to
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