Re: [galaxy-user] MACS out put files from Galaxy

2012-09-11 Thread Duclot, Florian
Hi Peter, I will try to give you my basic understanding of how MACS works. But before, I would recommend you to read the MACS Readme http://liulab.dfci.harvard.edu/MACS/README.html , where you will find detailed explanations of how MACS works and what the different output files are. 1.

Re: [galaxy-user] interupted running jobs restart

2012-09-11 Thread Nate Coraor
On Aug 27, 2012, at 8:53 AM, petr wrote: We are running galaxy on pbs cluster. In out setting some jobs can take several weeks to finish and it is virtually impossible to wait for suitable moment when server can be restarted or turn down without interrupting running tasks. Is there an option

Re: [galaxy-user] MACS out put files from Galaxy

2012-09-11 Thread Jennifer Jackson
Hi Peter, Florian's answers are very good - I am not sure this will add much, but perhaps a little, for the Galaxy output datasets parts of the questions ... The latest Using Galaxy paper, protocol 3, includes all of the optional output that MACS in Galaxy will produce (in addition to the