Re: [galaxy-user] cuffdiff fpkm=0 not significant

2012-10-16 Thread Haiping Hao
ib, Look at the status column. I suspect that for this example you given the status is HiData. Cuffdiff considers the expression are very high and no statistic testing would have been done for the gene. fpkm 2=0 could be misleading, as it may not be actually 0. I have encountered in a

[galaxy-user] encode rna-seq data

2012-10-16 Thread laura lafontaine
Hi everyone, I'm new in Galaxy and I want to know if is possible download whole rna-seq data from ENCODE project to my local galaxy instance (I have a disk of 5 To) . If yes, would you explain me how I can do this? Thank you in advance for your answer, L