[galaxy-user] customize tool display in the workflow

2013-08-18 Thread Jun Fan
Dear Galaxy develop team:

 

Normally I generate the workflow from history. It works fine except
one annoying problem: the display of step/tool is just the tool name, which
can cause confusion in a big workflow. For example, I have a mixture of
samples from multiple species and do the BLAST against Human, Virus, Mouse
etc which will call BLAST several times. To make results distinguishable, I
will rename the dataset in the history. But this will be lost when creating
workflow from history. The workflow will have duplicate steps named as BLAST
while I really want to have steps displayed as BLAST against Human etc.
Could you tell me whether I have done something wrong? If not, could you
kindly add  this functionality into the new release of Galaxy? If it is
possible to customize the tool display in the workflow, how to write the
wrapper as setting the label to allow this?

 

Best regards!

Jun

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Re: [galaxy-user] Is anyone using Galaxy with NeuroScience ?

2013-08-18 Thread Neil.Burdett
Hi Zeeshan,
We're starting to use Galaxy fro neuro-imaging projects 
particularly detecting the onset on Alzheimer's disease by quantifying the loss 
of grey matter in the cortex, so we have methods to register and segment brains 
etc ...

Neil

From: galaxy-user-boun...@lists.bx.psu.edu 
[mailto:galaxy-user-boun...@lists.bx.psu.edu] On Behalf Of Zeeshan Ali Shah
Sent: Friday, 16 August 2013 8:03 PM
To: galaxy-user@lists.bx.psu.edu
Subject: [galaxy-user] Is anyone using Galaxy with NeuroScience ?

Hi, Is any one using galaxy for Neuroscience and brain imaging ?

--

Regards

Zeeshan Ali Shah
System Administrator - PDC HPC
PhD researcher (IT security)
Kungliga Tekniska Hogskolan
+46 8 790 9115
http://www.pdc.kth.se/members/zashah
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