On Wed, Sep 25, 2013 at 7:27 PM, Lauren Oldfield lm...@pitt.edu wrote:
My question: How can I generate a pileup with an output of more than 8000
hits per base? I was generating pileups using the SAM tools -- Generate
pileup and do not see an option to change the settings for output. In
mpileup
All,
My understanding is that the cleanup_datasets.py under scripts/cleanup_datasets
should be compatible with 'older' versions of postgresql. I'm running 8.1
under CentOS 5. When I attempt to run the scripts, it fails to clean any data
sets. From the logs, I'm noticing messages like:
Sorry for not being able to take a look at this sooner, thanks for figuring
it out and posting back! This one must have fallen through the cracks when
we updated all the paths with the last Cloudman release, I'll make a note
to fix it with our next minor update.
-Dannon
On Thu, Sep 26, 2013 at
Dear all,
I have been looking for an answer to my problem in all the Galaxy
Support resources but with no success. I am sorry if this topic has been
already discussed!
So, I am analyzing MiSeq data on the main Galaxy.
I have Fastq files from 4 paired-end samples. After having checked the
Dear all,
please could you recommend any resource/collection/database of known
ChIP-seq tracks that also include a significance analysis tool ?
thanks,
Bogdan
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Hello Bogdan,
The ENCODE project is a very large collection of expression data that
includes ChIP-seq. You can find this in the UCSC Genome Browser. There
is an ENCODE portal and a google group if you have questions about usage
or content. The datasets can be imported into Galaxy for further
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