[galaxy-user] bed to bigbed conversion

2011-06-19 Thread Gijs Santen
Dear users, I am only recently beginning to discover Galaxy, so please bear with me... I am trying to convert a bed to bigbed file, but the job remains 'grey', it does not start. I repeated the same conversion with the UCSC sample file

Re: [galaxy-user] bed to bigbed conversion

2011-06-19 Thread Hiram Clawson
FYI: The bedToBigBed converter is one of the lower memory usage big* converters, with a longer running time: http://genomewiki.ucsc.edu/index.php/Big_file_converters --Hiram ___ The Galaxy User list should be used for the discussion of

[galaxy-user] Question please -manhattan plots

2011-06-19 Thread Sagi
Dear sir, I was looking through your Galaxy Wiki, but could not find an answer to my question. I would most appreciate any help regarding the following issue: I'm conducting a GWAS study in horses. Up until now I've been using PLINK for my association analysis, and now I wish to generate a

[galaxy-user] Small RNA Mapping

2011-06-19 Thread Shayne Bellingham
Dear Galaxy Team, I was recently pointed to your website to analyse my NGS data, my primary interest is in mapping small RNA reads to microRNA. After following the tutorials (which are excellent) I am able to upload and map with Bowtie by small RNA data set produced from the SOLID