[galaxy-user] Finding Galaxy version

A perhaps obvious question: how do I work out what version of Galaxy an instance is? This has come up a few times because of apparent bugs and different behaviour across various development and production instances. Now if you're installed straight from the repo, you can use hg log for the

[galaxy-user] Help

Hi, I read on Readme for MACS that: For the experiment with several replicates, it is recommended to concatenate several ChIP-seq treatment files into a single file. Now, I have illumina ChipSeq data: two files for IP samples and two files for Control samples. Is It right to use Concatenate

[galaxy-user] SNPEff - Reports Gain of Stop Codon as FRAME_SHIFT in some cases

Hi Pablo, Correct me if I am wrong, but I believe that SNPEff doesn't check the inserted sequence when computing the effect of an insertion? For instance an insertion of TTTA will be reported as a frameshift mutation. In the majority of cases this is fine, however if the current reading frame