Re: [galaxy-user] problems with the uploading

Hi, I started using Galaxy on the cloud, but later I decided to install a local instance. You can check it out here http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy If you have a reasonable computer probably you can run gene expression analysis (tophat, cufflinks etc) locally. My local instance

Re: [galaxy-user] Sequences are not currently available for the specified build.

Hi Rich, You could do this or you could switch to this version of the human genome (is in all of Galaxy's tools, but will not be useable at UCSC): Human (Homo sapiens) (b37): hg_g1k_v37 Thanks, Jen Galaxy team On 6/6/12 7:30 AM, Richard Linchangco wrote: Dear Jen, Thanks again! Does

[galaxy-user] Cufflinks GTF

Dear Galaxy, I know this issue has been discussed multiple times but I think what I'm trying to do is a little bit different and I wanted to see if it is viable. Some time ago, I used bowtie and the included index for Mus musculus to do an alignment. Now I'm looking to use Cufflinks/compare/diff