Re: [galaxy-user] tophat output spice junction output
Hello Irene, Please see: http://wiki.g2.bx.psu.edu/Learn/Datatypes#Learn.2BAC8-Datatypes.Bed The BED data format was created by UCSC: http://genome.ucsc.edu/FAQ/FAQformat.html#format1 The TopHat manual also links to the UCSC specification: http://tophat.cbcb.umd.edu/manual.html (scroll to TopHat Output) Thanks! Jen Galaxy team On 7/20/12 5:34 AM, i b wrote: Hi, where can I find an explanation of the columns in the splice junctions output? From 7 to12 they are only numbered thanks, ib ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Jennifer Jackson http://galaxyproject.org ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] galaxy wiki error
Hello, Nice catch! I made the corrections (this time) but next time we encourage you to jump right in and contribute to the wiki directly! Create an account and become an editor... http://wiki.g2.bx.psu.edu/VettedEditorGroup Feel free to double check big content edits/changes you are thinking about for the admin pages with a post to the galaxy-...@bx.psu.edu mailing list. Or, if minor, just make the change. Many of us watch the wiki change RSS feed or wiki and will notice if something is off: http://wiki.g2.bx.psu.edu/RecentChanges Thanks again! Jen Galaxy team On 7/25/12 11:37 PM, lufang0...@sina.com wrote: Hi I find an error in the galaxy wiki page. please see Admin/Datatypes/Adding Datatypes which URL is http://wiki.g2.bx.psu.edu/Admin/Datatypes/Adding%20Datatypes datatype extension=foo type=galaxy.datatypes.tabular.Foobar display_in_upload=true/ sniffer type=galaxy.datatypes.tabular.Foobar/ I guess there should be : between tbular and Foobar not . ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Jennifer Jackson http://galaxyproject.org ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
