Hi Sachit,
the bismark wrapper is not finished, that's the reason its only in the
test-toolshed. When its finished you do not neet bismark to be
installed, but bowtie.
Cheers,
Bjoern
I integrated Bismark in Galaxy in my server. I downloaded Bismark from
Galaxy Tool shed. I just copied the
Hi Jennifer,
I am now trying to run MACS 1.3.7.1. in Galaxy.
I also ran python setup.py install and set variables $PATH and
$PYTHONPATH for the commandline run. Nevertheless, MACS gives error:
/ImportError: No module named MACS.OptValidator/
I checked - library OptValidator.py exists in the
Yes, daemon/stop-daemon is the best way. However, to stop a process that was
not started with --daemon, this is what I do:
ps aux | grep galaxy
Identify the process numbers for 3 Galaxy processes, which will change every
time Galaxy is restarted.
For example this line:
galaxy 11638 0.0
Hi Jeremy,
Thanks for your offer of help. By the time I got your email I had already
added many new jobs to the history that are either running now or waiting
to run. Since I read somewhere that if the history is running then there
are problems exporting I shared a clone of the history with you.
Hello Kshama,
We would like to help. I looked for an account under your email address
kasw...@masonlive.gmu.edu on the public Main Galaxy instance at
http://main.g2.bx.psu.edu (http://usegalaxy.org), and did not find one,
so I will tell you how to check for the data yourself, then you can
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