Re: [galaxy-user] User's information

2012-11-30 Thread Peter Cock
On Friday, November 30, 2012, Sachit Adhikari wrote: Where are the user's information stored in Galaxy? I can't find the information in universe_wsgi. Regards, Sachit It is in the database (PostgreSQL usually, but MySQL is also supported, and for simple test setups even SQLite mostly

Re: [galaxy-user] Cuffdiff tracking file does not report all genes and trancrips from reference annotation?

2012-11-30 Thread Jennifer Jackson
Hello Wei, The results do sound strange. The best advice to start with is to make sure that you are up-to-date with both Galaxy and the RNA-seq tools and using the best possible inputs. 1 . Make sure that you are running the latest distribution

[galaxy-user] December 2012 Galaxy Update

2012-11-30 Thread Dave Clements
Hello all, The December 2012 Galaxy Update is now availablehttp://wiki.galaxyproject.org/GalaxyUpdates/2012_12at http://wiki.galaxyproject.org/GalaxyUpdates/2012_12. *Highlights:* - 37 new papershttp://wiki.galaxyproject.org/GalaxyUpdates/2012_12#New_Papers, including papers on

Re: [galaxy-user] Analysis in queue but not running

2012-11-30 Thread Dave Clements
Hi Lew, CC'ing the galaxy-user list because I am assuming that your question is about the free public server (Main) @ usegalaxy.org / main.g2.bx.psu.edu. If you have any future questions about Main, please post them to Galaxy-User so that others can see the question and respond. If I am reading

Re: [galaxy-user] dataset not visible

2012-11-30 Thread Jennifer Jackson
Hello Ilse, Your history/dataset issue was linked to a display problem that has now been resolved on the public Main Galaxy server. We found that this UI behavior was often linked to the use of Internet Explorer as a browser. For the best UI functionality when using