[galaxy-user] Problem with workflow step ordering
When i create a GALAXY workflow the order of the steps in the summary are fine until the main pipeline diverges into multiple branches. Then the steps from the different branches get shuffled in the summary and it is difficult to see what is going on. Q. Is it possible to manually reorder steps in a GALAXY workflow summary? There used to a problem where workflows with multiple inputs would randomise the order of the inputs each time the workflow was run. Now the proximity of the inputs to the top left-hand edge of the workflow dictates the precedence. Also, if i manually run the steps one at a time in order in a history and create a workflow from that, in the creation summary (just before making the workflow) everything is in order, however when the workflow is run the order has been messed up. Thanks, Ian ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Cuffdiff statistical calculations are inconsistent?
The header of the Cuffdiff tool page says it is version 0.0.5 This version is the Galaxy tool wrapper version, not the tool version. (Yes, this is a usability issue.) You can find the tool version in the dataset's information panel by clicking on the 'i' icon. Is there a way, or setting, on Cuffdiff 2.0 to revert the parameters to be more similar to Cuffdiff 1.3? This isn't a parameter issue. The Cuffdiff algorithm has changed substantially, and it's not clear to me if/how (or whether it's a good idea at all) to modify parameters to obtain 1.3-esque results. Best, J. ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
