This question is w/ regards to pre-processing whole genome resequencing data
for mapping data to a reference yeast strain.
I'm having trouble joining paired end data. I have two files per sample (read1
and read2).
I've successfully uploaded my fastq.gz files into galaxy using FTP. I have two
Dear Galaxy Developers,
I am trying to run Galaxy on ARM architecture. I am able to scramble the eggs
locally. However, I am unable to run Galaxy on my machine as run.sh gives an
error after some initialization steps:
galaxy@arm01-48:/mnt/ceph/galaxy/galaxy-dist$ ./run.sh
Initializing
Hello Tim,
Yes, this is a known issue, a few of the tools do not function with
sequences with the newer formatted identifiers.
There is a bare-bones Trello ticket for the upgrade, but to be honest,
this hasn't been prioritized because of so few use cases:
https://trello.com/c/bhurghHk
Hi David,
Using Galaxy to teach undergraduates is a long term interest of mine.
Which, unfortunately, does not mean I have yet put a lot of thought into
it. However, lack of thought hasn't stopped me yet.
First, this topic was discussed in a breakout at last year's GCC:
Thanks Dave!
The focus is clearly more like your second description. The course is not
intended to show them how to use command lines, or how to navigate in a
UNIX environment and how to program. In fact, I think some would call what
I have in mind more of a computational biology course than a
Hi David,
Galaxy does sound like a great match for this course. It could also play a
(smaller) part in the other course you are considering. Part of the course
could include installing Galaxy and wrapping other tools to put into it.
We are a Python based framework
I do strongly recommend you
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