[galaxy-user] Pb with ftp connexion (FileZilla)

Hi, I am trying to connect to the Galaxy server via Filezilla in order to upload datasets. The connexion fails, with this message: ECONNREFUSED - Connection refused by server. I have checked my password which works well to login to my account on the main server. Is it just temporal? Should I

Re: [galaxy-user] Pb with ftp connexion (FileZilla)

Hi Fabrice, Are you connecting to `usegalaxy.org`? This changed when we moved main.g2.bx.psu.edu to usegalaxy.org. Thanks, --nate On Nov 8, 2013, at 6:32 AM, Fabrice Besnard wrote: Hi, I am trying to connect to the Galaxy server via Filezilla in order to upload datasets. The connexion

[galaxy-user] multiple output tool in workflow

Hi all, I am trying to creating a workflow from history. One of the tool used generates multiple outputs in the format of gff3, fasta and sam. Gff3 will be visualized in IGV and the fasta file is doing further BLAST analysis. Now the problem is that the automatically generated workflow

[galaxy-user] How to lower disc usage in order to resume workflow

Hello, Re: https://usegalaxy.org/u/cmfarnet/h/pf2-34-map-1-r1-only I am a new user, and I uploaded WGS data to perform the published CloudMap Hawaiian Variant mapping with WGS workflow (History link above). I received the notice: You are over your disk quota. Tool execution is on hold until

[galaxy-user] Tophat2 (version 0.6)

Is there any chance to have the Arabidopsis genome put in the sliding menu of the Tophat2 (version 0.6)? Thank you Roberta Galletti ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features

Re: [galaxy-user] multiple output tool in workflow

Moved to galaxy-...@bx.psu.edu On 11/8/13 10:19 AM, Jun Fan wrote: Hi all, I am trying to creating a workflow from history. One of the tool used generates multiple outputs in the format of gff3, fasta and sam. Gff3 will be visualized in IGV and the fasta file is doing further BLAST

Re: [galaxy-user] How to lower disc usage in order to resume workflow

Hi Chris, This video can show you how to monitor and manage your account data: http://vimeo.com/galaxyproject/managehistories This wiki also has the instructions, written: http://wiki.galaxyproject.org/Learn/Managing%20Datasets#Delete_vs_Delete_Permanently Hopefully this helps, Jen Galaxy

Re: [galaxy-user] Botryllus genome

Hi Katie, For genomes that are not available on Galaxy Main (or general questions you might have about Galaxy), it's best to send an email to the galaxy-user mailing list (CC'd now). You can subscribe to the mailing list here http://lists.bx.psu.edu/listinfo/galaxy-user As far as the particular