Thanks-found it! We have a lot of data, but are trying to convert some data to
BED format, and I think that this will help.
Brenda
On Apr 10, 2014, at 7:50 PM, Jennifer Jackson wrote:
Hi Brenda,
The examples below are labeled by the tool/user interface location where the
two menus are located. Which tool are you using under Get Data? Perhaps UCSC
Main?
Any tool other than Upload File accesses an external data source and the
available data can vary. It is important to know that the data content included
on externally hosted sites is managed by that sites owners. If you are using
Get Data - UCSC Main, then you are correct in that they do not provide data
for this genome, just the ones you list.
When you do locate data for this species that you wish you use (try searching
for Tribolium castaneum with the tool EBI SRA ENA SRA), and import it, the
Galaxy locally cached reference genome for Tcas_3.0 is available with several,
but not all, mapping tools. It is likely to be added to Bowtie2/Tophat2
sometime in the future.
Thanks!
Jen
Galaxy team
On 4/10/14 2:27 PM, Brenda Oppert wrote:
Hi Jen,
When I go to get data and I put insect the only pull downs are some
Drosophila and Anopheles spp. Is it somewhere else?
Thanks,
Brenda
From: Jennifer Jackson j...@bx.psu.edumailto:j...@bx.psu.edu
Sent: Thursday, April 10, 2014 4:18 PM
To: Brenda Oppert;
galaxy-user@lists.bx.psu.edumailto:galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Add Tribolium genome
Hello Brenda,
Are you working at http://usegalaxy.orghttp://usegalaxy.org/? I just checked
and it is still there. Please give this another look.
Thanks!
Jen
Galaxy team
On Get Data - Upload File tool:
Mail Attachment.png
Under Edit Attributes (found by clicking on a dataset's pencil icon):
Mail Attachment.png
On 4/10/14 11:06 AM, Brenda Oppert wrote:
I thought that the genome sequence for Tribolium castaneum (Tcas3.0) was in the
genome pull-down, but I don't see it. Can it be added?
Thanks,
Brenda
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Jennifer Hillman-Jackson
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The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using reply all in your mail client. For discussion of
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