Re: [galaxy-user] Galaxy-Condor Permission Denied

2011-10-04 Thread Nathan Panike
You might want to ask about this on condor-us...@cs.wisc.edu, if it is a Condor problem. (cc'd) On Tue, Oct 04, 2011 at 04:53:24PM -0500, Oren Livne wrote: Dear All, I am using Galaxy with condor as the scheduler via the DRMAA Job Runner. on Debian 6. Jobs are submitted to COndor but they

Re: [galaxy-user] Galaxy-Condor Permission Denied

2011-10-05 Thread Nathan Panike
within the condor_submit command. What is the output of the following? condor_q -f '%s\n' FileSystemDomain job condor_q -f '%s\n' Owner job condor_q -f '%s\n' User job Nathan Panike ___ The Galaxy User list should be used for the discussion

Re: [galaxy-user] Galaxy-Condor Permission Denied

2011-10-05 Thread Nathan Panike
for your help. You're welcome Nathan Panike ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your

[galaxy-user] Condor in bioinformatics pipeline

2012-02-03 Thread Nathan Panike
Has anyone had success using the Condor scheduling system with the following software? RSEM ChimeraScan GATK BreakDancer VariationHunter Thanks, Nathan Panike, n...@cs.wisc.edu UW-Madison Center for High Throughput Computing ___ The Galaxy