[galaxy-user] bigWig to wig conversion

Hi, I am wondering if it is possible to convert from bigWig to wig format in Galaxy. Sincerely, Sébastien Vigneau ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server

[galaxy-user] Importing workflow from file fails in Galaxy instance on Amazon Cloud

Hi, I can't import workflows from file on a freshly installed instance of Galaxy on Amazon Cloud. The error message is copied below. Do you have some idea on how to fix this? Thanks, Sébastien Internal Server Error Galaxy was unable to sucessfully complete your request URL:

[galaxy-user] Preferred way to make custom tool accessible though path

Hi, I have written a simple xml wrapper to run the UCSC *bigWigToBedGraph* tool on a custom Galaxy install on Amazon cloud. The tool works as expected in this install. The xml file itself is in /mnt/galaxy/galaxy-app/tools/myTools, but I added the bigWigToBedGraph binary to the

Re: [galaxy-user] Finding constitutive exons using expression data (7plusorminus 3)

Hi 7plusorminus 3, One possibility is to use the group tool with max operation, to get the highest expressed exon for each gene. Then, you may use subtract datasets to remove the highest expressed exons from the original dataset, and iterate to get the second highest expressed exons (which are