[galaxy-user] Cuffdiff errors
Hello I am having a problem running Cuffdiff on some RNA-seq data. I want to compare 2 of my conditions. I successfully used Cuffdiff three days ago to compare two sets of data that are processed the exact same way (align with Tophat and use Picard to confirm adequate alignment). I am using Galaxy through MAIN and I tried Cuffdiff with these samples on 1/18 and 1/19. Here's the error: An error occurred running this job: *cuffdiff v1.3.0 (3022) cuffdiff --no-update-check -q -p 8 -c 1000 --FDR 0.05 -b /galaxy/data/hg19/sam_index/hg19.fa --labels DMSO,E2 /galaxy/main_pool/pool2/files/003/607/dataset_3607369.dat /galaxy/main_pool/pool2/files/003/590/dataset_3590726.dat,/g* Thanks for the help. -- Erin Shanle Graduate Research Assistant Molecular and Environmental Toxicology 425 McArdle Laboratory for Cancer Research 1400 University Ave Madison, WI 53706 608 262 9834 sha...@wisc.edu ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] Trackster errors
00175000 fe:00 713850 /usr/lib/libcrypto.so.0.9.8 7ff656d1d000-7ff656d21000 rw-p 00:00 0 7ff656d21000-7ff656d7 r-xp fe:00 713852 /usr/lib/libssl.so.0.9.8 7ff656d7-7ff656f6f000 ---p 0004f000 fe:00 713852 /usr/lib/libssl.so.0.9.8 7ff656f6f000-7ff656f76000 rw-p 0004e000 fe:00 713852 /usr/lib/libssl.so.0.9.8 7ff656f76000-7ff656f78000 r-xp fe:00 1514753 /lib/libutil-2.11.2.so 7ff656f78000-7ff657177000 ---p 2000 fe:00 1514753 /lib/libutil-2.11.2.so 7ff657177000-7ff657178000 r--p 1000 fe:00 1514753 /lib/libutil-2.11.2.so 7ff657178000-7ff657179000 rw-p 2000 fe:00 1514753 /lib/libutil-2.11.2.so 7ff657179000-7ff65717b000 r-xp fe:00 1514737 /lib/libdl-2.11.2.so 7ff65717b000-7ff65737b000 ---p 2000 fe:00 1514737 /lib/libdl-2.11.2.so 7ff65737b000-7ff65737c000 r--p 2000 fe:00 1514737 /lib/libdl-2.11.2.so 7ff65737c000-7ff65737d000 rw-p 3000 fe:00 1514737 /lib/libdl-2.11.2.so 7ff65737d000-7ff657394000 r-xp fe:00 1514748 /lib/libpthread-2.11.2.so 7ff657394000-7ff657593000 ---p 00017000 fe:00 1514748 /lib/libpthread-2.11.2.so 7ff657593000-7ff657594000 r--p 00016000 fe:00 1514748 /lib/libpthread-2.11.2.so 7ff657594000-7ff657595000 rw-p 00017000 fe:00 1514748 /lib/libpthread-2.11.2.so 7ff657595000-7ff657599000 rw-p 00:00 0 7ff657599000-7ff6575b7000 r-xp fe:00 1514704 /lib/ld-2.11.2.so 7ff6575ec000-7ff65762d000 rw-p 00:00 0 7ff65762e000-7ff6576f1000 rw-p 00:00 0 7ff657723000-7ff6577aa000 rw-p 00:00 0 7ff6577b1000-7ff6577b2000 rw-p 00:00 0 7ff6577b2000-7ff6577b3000 rwxp 00:00 0 7ff6577b3000-7ff6577b6000 rw-p 00:00 0 7ff6577b6000-7ff6577b7000 r--p 0001d000 fe:00 1514704 /lib/ld-2.11.2.so 7ff6577b7000-7ff6577b8000 rw-p 0001e000 fe:00 1514704 /lib/ld-2.11.2.so 7ff6577b8000-7ff6577b9000 rw-p 00:00 0 7fffc7e81000-7fffc7ea2000 rw-p 00:00 0 [stack] 7fffc7fff000-7fffc800 r-xp 00:00 0 [vdso] ff60-ff601000 r-xp 00:00 0 [vsyscall] Aborted -- Erin Shanle Graduate Research Assistant Molecular and Environmental Toxicology 425 McArdle Laboratory for Cancer Research 1400 University Ave Madison, WI 53706 608 262 9834 sha...@wisc.edu ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
