[galaxy-user] FTP upload problem
Hi, I am trying to upload 12 fastq files to Galaxy via FTP. The FTP is randomly loosing connection, caussing interruption of the upload. Can you let me know what is wrong? Thanks, fatih ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Data upload issues on Galaxy
Hi Jennifer, I had some uploads that were probably stuck and going on for 5-7 days. I deleted them and uploaded 2 new files for upload. can you please check and see if the upload is happening normally for these files? Thanks a lot for your help and patience thanks, fatih On Wed, Jun 20, 2012 at 10:43 PM, Jennifer Jackson j...@bx.psu.edu wrote: Hello Fatih, I found five jobs under your account in the NGS cluster queue. Job processing is normal - the Galaxy main instance is just very busy today. Your jobs will process in the order that they were queued (the size of the jobs does not impact how long it takes for them to begin to run, only when they where started with respect to other jobs and how long those earlier jobs take to complete). There are substantial resources dedicated to the public instance, so I would expect your jobs to begin to process within the next 24 hrs (at the latest). If your work is urgent, a cloud instance is the recommended alternative: http://getgalaxy.org/cloud Best, Jen Galaxy team On 6/20/12 6:44 PM, Fatih Ozsolak wrote: Hi, I submitted Bowtie and BWA alignment jobs on two relatively small fastq files, and the jobs still appear as gray after multiple hours. can you please check and see if the system if functioning properly? thanks, fatih ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Jennifer Jacksonhttp://galaxyproject.org ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] jobs stuck on Galaxy
Hi Jennifer, I cannot seem to access the galaxy website. can you please check? Thanks, fatih On Wed, Jun 20, 2012 at 10:43 PM, Jennifer Jackson j...@bx.psu.edu wrote: Hello Fatih, I found five jobs under your account in the NGS cluster queue. Job processing is normal - the Galaxy main instance is just very busy today. Your jobs will process in the order that they were queued (the size of the jobs does not impact how long it takes for them to begin to run, only when they where started with respect to other jobs and how long those earlier jobs take to complete). There are substantial resources dedicated to the public instance, so I would expect your jobs to begin to process within the next 24 hrs (at the latest). If your work is urgent, a cloud instance is the recommended alternative: http://getgalaxy.org/cloud Best, Jen Galaxy team On 6/20/12 6:44 PM, Fatih Ozsolak wrote: Hi, I submitted Bowtie and BWA alignment jobs on two relatively small fastq files, and the jobs still appear as gray after multiple hours. can you please check and see if the system if functioning properly? thanks, fatih ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Jennifer Jacksonhttp://galaxyproject.org ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] jobs stuck on Galaxy
Hi, I submitted Bowtie and BWA alignment jobs on two relatively small fastq files, and the jobs still appear as gray after multiple hours. can you please check and see if the system if functioning properly? thanks, fatih ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
