Re: [galaxy-user] Initial QC and grooming for Illumina HiSeq2000 paired end RNAseq data

are welcome to post comments/suggestions. Jen Galaxy team On 7/2/12 11:17 AM, Lindsey Kelly wrote: I am trying to do RNAseq analysis on Paired end data from the Hiseq2000. I have about 50 files for each sample (25 forward and 25 reverse - although each sample has a different number of files). I

[galaxy-user] Initial QC and grooming for Illumina HiSeq2000 paired end RNAseq data

I am trying to do RNAseq analysis on Paired end data from the Hiseq2000. I have about 50 files for each sample (25 forward and 25 reverse - although each sample has a different number of files). I think that I need to: -convert them into FASTQ sanger format using the FASTSQ groomer tool -check