Hi,
I have been having FTP issues for the past several days. I am using Filezilla.
The upload starts, then stops after about 32MB and the connection closes and
tries to reopen, then closes again. I also tried the command line ftp client
in win7 with same results.
rich
I am unable to access for past several hours. Are others having the same issue?
rich
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all
Likewise. I can get to my Saved Histories, but when i click on one, very few
items (if any) show up in the rightside panel. ive also tried multiple
browsers, etc.
rich
From: Cittaro Davide cittaro.dav...@hsr.it
To: galaxy-u...@bx.psu.edu
yup...took a while, but eventually resolved. thanks.
rich
From: Nate Coraor n...@bx.psu.edu
To: Richard Mark White whit...@yahoo.com
Cc: Jennifer Jackson j...@bx.psu.edu; galaxy-u...@bx.psu.edu
galaxy-u...@bx.psu.edu
Sent: Monday, December 5, 2011 3:39 PM
Hi,
I was nearing my disk quota (at 97%), so I deleted a large number of datasets
using delete permanently. But my usage did not go down at all. Is there a
delay in this happening, or is there some way to purge the files?
richard
___
Jackson j...@bx.psu.edu
To: Richard Mark White whit...@yahoo.com; galaxy-u...@bx.psu.edu
galaxy-u...@bx.psu.edu
Cc: closetic...@galaxyproject.org
Sent: Wednesday, November 30, 2011 1:09 PM
Subject: disk quota not updating
Hi Richard,
Yes, it takes a short time for the UI counts to update. If you
actually, i just waited a bit and now they are deletd.
r
From: Nate Coraor n...@bx.psu.edu
To: Richard Mark White whit...@yahoo.com
Cc: GANDRILLON OLIVIER olivier.gandril...@univ-lyon1.fr;
galaxy-u...@bx.psu.edu galaxy-u...@bx.psu.edu
Sent: Wednesday, October
i've been using a tool called annovar for this. it is a perl script, but on a
mac or linux box very easy to implement (via terminal window on mac). will
filter based on dnSNP, 1000 genomes or complete genomics datasets. very
straightforward with really no programming ability needed.
rich
Hi,
I mapped two illumina runs using TopHat (they are from same RNA sample).
Then tried to use the BAM merge tool to make this into one BAM file for further
processes. But it returned an empty file. Is this not possible? Maybe I am
not understanding the purpose/use of BAM merge?
Rich
Hi,
This must seem like a newbie question but I cant get a clear answer. My
understanding from the galaxy wiki
page http://wiki.g2.bx.psu.edu/Learn/FAQ#Learn.2BAC8-FAQ.Interval_and_BED_format
is that all intervals in galaxy are 0 based, start inclusive end exclusive.
but when i use
Hi,
This must seem like a newbie question but I cant get a clear answer. My
understanding from the galaxy wiki
page http://wiki.g2.bx.psu.edu/Learn/FAQ#Learn.2BAC8-FAQ.Interval_and_BED_format
is that all intervals in galaxy are 0 based, start inclusive end exclusive.
but when i use
Hi,
this should be simple but it is not..forgive the newbie question.
i am doing chip-seq. bowtiesam filter for mapped readsMACS.
i want to create a wiggle file that displays in ucsc, but when i choose the
WIG option on macs, and then try to show it in UCSC, it treats each line of
the
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