[galaxy-user] Intersect multiple sorted BED files / tool-data/shared/ucsc/chrom/genome_test.len) could not be opened

, %s.len % input_dbkey ) But I always have the same error message. Could you please help us ? Thanks in advance, Sarah // -- --*-- Sarah Maman INRA - GenPhySE - SIGENAE http://www.sigenae.org/ Chemin de Borde-Rouge - Auzeville - BP 52627 31326 Castanet-Tolosan cedex - FRANCE Tel

Re: [galaxy-user] How to share an history with a SPECIFIC user ?

with me" which is in the History options menu: -- James Taylor, Assistant Professor, Biology/CS, Emory University On Mon, Jun 3, 2013 at 11:22 AM, Sarah Maman sarah.ma...@toulouse.inra.fr wrote: Hello Jennifer, I would like to share only with a specific user but when I use the meth 3 with the ema

Re: [galaxy-user] How to share an history with a SPECIFIC user ?

Shared Histories where everyone using that server can see it 3 - share with just a user by entering in their email address into last section Hopefully this helps, Jen Galaxy team On 6/3/13 6:58 AM, Sarah Maman wrote: Hello, My question is about sharing histories _with a specific user

Re: [galaxy-user] How to share an history with a SPECIFIC user ?

the exact full name of the history in your account that you are trying to share. Thanks, Jen Galaxy team On 6/3/13 8:22 AM, Sarah Maman wrote: Hello Jennifer, I would like to share only with a specific user but when I use the meth 3 with the email address into last section, my history

[galaxy-user] Information for Galaxy Event Horizon

Event Horizon? Sincerely, Sarah Maman -- --*-- Sarah Maman INRA - LGC - SIGENAE http://www.sigenae.org/ Chemin de Borde-Rouge - Auzeville - BP 52627 31326 Castanet-Tolosan cedex - FRANCE Tel: +33(0)5.61.28.57.08 Fax: +33(0)5.61.28.57.53

Re: [galaxy-user] Error / Nebula - Chipmunk

Hi Alban, After a few weeks on other work, I try again the integration of your suite Nebula in my local instance of Galaxy. If possible, could you please help me to understand why the script parseChipmunkOutput.pl doesn't found results in my Galaxy instance. Here are the steps performed:

Re: [galaxy-user] Error / Nebula and RepeatMasker

: +33 (0) 1 56 24 69 84 Le 5 févr. 2013 à 14:53, Sarah Maman sarah.ma...@toulouse.inra.fr mailto:sarah.ma...@toulouse.inra.fr a écrit : Hi Alban, Marie-Stephane and Bjoern, * _*For IntersectBed tool,*_ running is OK. I've just deleted ; in xml file and your tool runs. My cluster add one

Re: [galaxy-user] Error / Nebula and RepeatMasker

(0) 1 56 24 69 84 Le 1 févr. 2013 à 14:41, Sarah Maman sarah.ma...@toulouse.inra.fr mailto:sarah.ma...@toulouse.inra.fr a écrit : Thanks Bjoern, In your xml file, I 've specified the interpreter : command replace by command interpreter=bash but the problem is not solved (; is supported

Re: [galaxy-user] [Ticket#2013010710000031] Installation de ChipMunk sur Genotoul

Génopole - Plateforme bio-informatique Centre INRA de Toulouse - Unité de BIA Chemin de Borde-Rouge - AUZEVILLE BP 52627 - 31326 CASTANET-TOLOSAN CEDEX tél. : +33 (0)5 61 28 54 27 Support : support.genop...@toulouse.inra.fr 08.01.2013 09:05 - Sarah Maman a écrit: Bonjour Marie-Stephane

Re: [galaxy-user] [Ticket#2013010710000031] Installation de ChipMunk sur Genotoul

Thanks to Marie-Stephane to have found that this error is due to a diifference of verion. Alban, could you please tell us which version (2 or 3) do you use in your Galaxy tools, in order to install this version on our cluster ? Thanks in advance, Sarah Sarah Maman a écrit : Thanks Alban

Re: [galaxy-user] Datasets permanently deleted

:35:34 2012 -0500 summary: Fix for populating the tool panel and generating the integrated_tool_panel.xml file. This behavior is not reproduce on your public server. Thanks, Sarah Maman Jeremy Goecks a écrit : Sarah, I can't reproduce this behavior on a local instance or on our public

[galaxy-user] Datasets permanently deleted

these datasets in saved datasets ? Thanks in advance, Sarah Maman ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply

Re: [galaxy-user] MarkupSafe cannot be fetched

: BWA run on single-end An error occurred running this job: entree dans bwa for illumina BWA Version: 0.6.1-r104 BWA run on single-end dataEpilog : job finished at ven avr 6 14:16:01 CEST 2012 entree dans bwa wapper Thanks in advance, Sarah Maman Sarah Maman a écrit : Hi Nate, When I operate

[galaxy-user] Login error + admin rights

...@inra.toulouse.fr) is a mistake. Could you please delete the second one ? Thank you in advance, Sarah MAMAN -- Sarah Maman INRA - LGC - SIGENAE Chemin de Borde-Rouge - Auzeville - BP 52627 31326 Castanet-Tolosan cedex - FRANCE Tel: +33(0)5.61.28.57.08 Tax: +33(0)5.61.28.57.53