[galaxy-user] NGS SAM Tools: Filter Pileup tool not working

2012-12-05 Thread Lanelle Oni Edwards
Hello, I am currently using galaxy main to run a filter pileup on datasets that used the generate pileup tool. The filter pileup function is not recognizing any of my generate pileup datasets in the drop-down box so I cannot even execute the job. I think there may be a problem with this tool. I

Re: [galaxy-user] NGS SAM Tools: Filter Pileup tool not working

2012-12-05 Thread Jennifer Jackson
Hi Lanelle, My initial guess is that the datatype is not set as pileup for your dataset - a standard, 6 column pileup format dataset. Perhaps you used the option to generate a consensus pileup with 10 columns? And so the output is labeled as tabular format? If so, you can cut the first 3