[galaxy-user] known name outputs shown in /database/files but not in galaxy windows

2014-04-03 Thread ANGELICA GOMEZ ROIG 
I have made a wrapper that has a tool that giving it an input file, gives
you two output files with known extension: .gem and .log
I call the tool with a python file, and I pass it the input file and the
two output file names for galaxy to show them, but when I look into de
database/files/000/ i get four files:

dataset_54.dat   (my first declared output that it's empty)
dataset_54.dat.gem (the output that throws the tool)
dataset_54.dat.log (the other output file that throws the tool)
dataset_55.dat (my second declared output that it's empty)

So,what I'm getting in the galaxy interface is  _54.dat and _55.dat, both
empty, instead of _54.dat.gem and _54.dat.log that are the good ones.  How
can I fix these?
Thanks
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Re: [galaxy-user] known name outputs shown in /database/files but not in galaxy windows

2014-04-03 Thread Jennifer Jackson 

Reply posted:
http://dev.list.galaxyproject.org/known-name-outputs-shown-in-database-files-but-not-in-galaxy-windows-tt4664079.html

Angelica,
Next time it would be great to post to only a single list. The 
galaxy-...@bx.psu.edu list is best for this type of question.

Take care,
Jen
Galaxy team

On 4/3/14 12:13 AM, ANGELICA GOMEZ ROIG wrote:
I have made a wrapper that has a tool that giving it an input file, 
gives you two output files with known extension: .gem and .log
I call the tool with a python file, and I pass it the input file and 
the two output file names for galaxy to show them, but when I look 
into de database/files/000/ i get four files:

dataset_54.dat   (my first declared output that it's empty)
dataset_54.dat.gem (the output that throws the tool)
dataset_54.dat.log (the other output file that throws the tool)
dataset_55.dat (my second declared output that it's empty)
So,what I'm getting in the galaxy interface is  _54.dat and _55.dat, 
both empty, instead of _54.dat.gem and _54.dat.log that are the good 
ones.  How can I fix these?

Thanks


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Galaxy analysis and other features on the public server
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use the Galaxy Development list:

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please use the interface at:

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--
Jennifer Hillman-Jackson
http://galaxyproject.org

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use the Galaxy Development list:

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