Hi Robert,
This function is not wrapped into a tool yet by the dev team. I checked
the Tool Shed as well and didn't see it there. But there is another
option to get to the same result.
The tool Text Manipulation - Select random lines from a file can be
used with a SAM file. Don't not use the tool on a BAM file.
Hopefully this helps!
Jen
Galaxy team
On 10/1/13 12:13 PM, Robert Jackman wrote:
Hi,
Can anyone tell me if the ability to randomly sample a sam or bam file
(view -s) is available via Galaxy samtools? I can't find it but it
might be an option that I am missing.
sincerely,
Robert Jackman
rais...@gmail.com
rjack...@bu.edu
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using reply all in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
--
Jennifer Hillman-Jackson
http://galaxyproject.org
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using reply all in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
