Re: [galaxy-user] Bowtie Seed length (-l) and non-unique reads mode (m=-1)

Hi Eric, On 3/19/12 4:13 PM, Eric Guo wrote: Hi there, I have two questions regarding alignment using Bowtie: 1. Is there a way to set the Seed Length (-l) to the full length of each read instead of using a single Seed Length for all reads? The seed length is a single input value for all

Re: [galaxy-user] Bowtie Seed length (-l) and non-unique reads mode (m=-1)

Hello Eric, I apologize, but I made a mistake, please see below On 3/21/12 5:42 AM, Jennifer Jackson wrote: Hi Eric, On 3/19/12 4:13 PM, Eric Guo wrote: Hi there, I have two questions regarding alignment using Bowtie: 1. Is there a way to set the Seed Length (-l) to the full length of each