Re: [galaxy-user] bed to gff

Hello, The first input file is not in BED format (specifically, BED12). This would be necessary in order to produce a GFF file with the proper attributes in the feature, frame, and group fields. The tool BED-to-GFF describes these formats. BED12 files are available from the UCSC table

[galaxy-user] BED to GFF

I am trying to use the galaxy BED to GFF function. The operation worked, but instead of giving me back any feature information (e.g., exon, intron, repeat, etc.); I just received back the sequence of the interval contained within the BED file. Does anyone know what I'm doing wrong? Moreover,

[galaxy-user] BED-to-GFF: option for gff3 format

Hi Galaxy developers, Any plans on adding a gff3 format option to BED-to-GFF? I found a BED-to-GFF3 converter at the Rätsch lab's instance of Galaxy (http://galaxy.tuebingen.mpg.de/). Any plans on making this converter more widely available? Karen :) Dept of Plant Biology University of