I'm trying to install Galaxy on our SGE cluster (using the Unified method).
I installed galaxy-dist, and now I'm on this section:
drmaa egg
The drmaa egg is provided by Galaxy, but you must tell it where your
resource manager's DRMAA library is located, and this is done with the
Have you installed SGE on the same machine? If so, then you should be able to
do a locate libdrmaa.so, which should point to SGE's DRMAA library. For
example,
on a machine that I use, I see this:
$ locate libdrmaa.so
/usr/lib/libdrmaa.so
/usr/lib/libdrmaa.so.1.0
$ ls /usr/lib/libdrmaa*
I forgot to add my value of DRMAA_LIBRARY_PATH. Note that I just need
DRMAA_LIBRARY_PATH to point to the library being used. So in the example
below, I had this:
echo $DRMAA_LIBRARY_PATH
/usr/lib/libdrmaa.so
-Scott
- Original Message -
Have you installed SGE on the same
Thanks Scott. I did turn up: /sge/8.0.1p4/lib/lx-amd64/libdrmaa.so.1.0
I guess that would be it.
For a followup question ,how do I make the DRMAA_LIBRARY_PATH variable
permanent on the machine?
-Greg
On Mon, Nov 5, 2012 at 3:03 PM, Scott McManus scottmcma...@gatech.eduwrote:
I forgot to
And am I correct in the thinking that only the machine hosting the
galaxy web interface and submitting jobs needs the export
DRMAA_LIBRARY_PATH= variable?
The normal nodes running jobs don't need this, right?
Thanks,
-Greg
On Mon, Nov 5, 2012 at 3:12 PM, greg margeem...@gmail.com wrote:
On Nov 5, 2012, at 3:15 PM, greg wrote:
And am I correct in the thinking that only the machine hosting the
galaxy web interface and submitting jobs needs the export
DRMAA_LIBRARY_PATH= variable?
The normal nodes running jobs don't need this, right?
Hi Greg,
That's correct. If you're
Well, I want it to ultimately run under Apache. Does it still make
sense to go in an init script?
thanks again,
Greg
On Mon, Nov 5, 2012 at 3:23 PM, Nate Coraor n...@bx.psu.edu wrote:
On Nov 5, 2012, at 3:15 PM, greg wrote:
And am I correct in the thinking that only the machine hosting the
On Nov 5, 2012, at 3:26 PM, greg wrote:
Well, I want it to ultimately run under Apache. Does it still make
sense to go in an init script?
thanks again,
Yes, even when running behind Apache, you'll need an init script (or similar
method) to start the Galaxy server.
--nate
Greg
On
On Nov 5, 2012, at 3:40 PM, greg wrote:
Ok, that makes sense.
Would you mind sharing how you set up your init script?
What goes in it, where you place it?
There are some sample init scripts in the contrib/ directory of the
distribution. You should be able to place the export near the
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