All,
I'm wondering why do we need to convert Illumina FASTQ into sanger using FastQ
Groomer before mapping with BWA in galaxy. The lastest version of BWA itself
added -I option to use Illumina data directly. What's your opinion on this?
Secondly, I found that "Map with BWA for Illumina" uses -I option in the
commandline during execution, even for sanger formatted reads. How does it
impact the results?
Thanks,
Raj
________________________________
This e-mail contains PRIVILEGED AND CONFIDENTIAL INFORMATION intended solely
for the use of the addressee(s). If you are not the intended recipient, please
notify the sender by e-mail and delete the original message. Further, you are
not to copy, disclose, or distribute this e-mail or its contents to any other
person and any such actions that are unlawful. This e-mail may contain viruses.
Ocimum Biosolutions has taken every reasonable precaution to minimize this
risk, but is not liable for any damage you may sustain as a result of any virus
in this e-mail. You should carry out your own virus checks before opening the
e-mail or attachment.
The information contained in this email and any attachments is confidential and
may be subject to copyright or other intellectual property protection. If you
are not the intended recipient, you are not authorized to use or disclose this
information, and we request that you notify us by reply mail or telephone and
delete the original message from your mail system.
OCIMUMBIO SOLUTIONS (P) LTD
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
