Re: [galaxy-user] Galaxy and Ion Torrent

2011-09-28 Thread Peter Cock
2011/9/28 cuentasecuenciacion secuenciac...@ipb.csic.es:
 Hello!!

 Does anybody know whether Ion Torrent data is supported by Galaxy?

 Thank you!!

IonTorrent data acts a lot like Roche 454, it even comes as SFF files
(or FASTQ). So in principle anything Galaxy supports for 454
would be worth trying with IonTorrent data.

Peter
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Re: [galaxy-user] Galaxy and Ion Torrent

2011-09-28 Thread Anton Nekrutenko
Also, test instance (http://test.g2.bx.psu.edu) has TMap mapper, which was 
recently rolled out for testing. The wrapper was contributed by Nils Homer. At 
this time there are only E. coli indices, but more can be added.

a.


Anton Nekrutenko
http://galaxyproject.org




On Sep 28, 2011, at 10:18 AM, Peter Cock wrote:

 2011/9/28 cuentasecuenciacion secuenciac...@ipb.csic.es:
 Hello!!
 
 Does anybody know whether Ion Torrent data is supported by Galaxy?
 
 Thank you!!
 
 IonTorrent data acts a lot like Roche 454, it even comes as SFF files
 (or FASTQ). So in principle anything Galaxy supports for 454
 would be worth trying with IonTorrent data.
 
 Peter
 ___
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:
 
  http://lists.bx.psu.edu/listinfo/galaxy-dev
 
 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:
 
  http://lists.bx.psu.edu/

___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
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use the Galaxy Development list:

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To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

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