Re: [galaxy-user] Genomic interval file for GATK

2011-12-12 Thread Praveen Raj Somarajan
this issue in Galaxy? Has anybody experienced/resolved this before? Thanks, Raj. From: Carlos Borroto [mailto:carlos.borr...@gmail.com] Sent: Thursday, December 08, 2011 7:43 PM To: Praveen Raj Somarajan Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Genomic interval file for GATK Hi

[galaxy-user] Genomic interval file for GATK

2011-12-07 Thread Praveen Raj Somarajan
All, I'm using a locally installed galaxy with GATK 1.3 beta (recently updated). I would be interested in variant calling using GATK on both Illumina and SOLiD data. My questions are: 1) What should be the format that Genomic Interval option can accept in beta version. It produced an error