Re: [galaxy-user] Problems using aaChanges tool
Hi Evan, The update to include zebrafish (and a few other genomes) should roll out to Galaxy main in the next few days, if not sooner. Feel free to check back Friday for an update if you do not see it there by then. Thank you for your patience! Best, Jen Galaxy team On 3/28/11 8:01 AM, Evan Schwab wrote: Hi Jen, The aaChanges tool is still not supporting the zebrafish Zv9 build. Can you please fix this so that I am able to use the aaChanges tool. It's very important. Thanks Evan -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] Problems using aaChanges tool
Hi, I am trying to use the aaChanges tool. I have a file of SNPs in the correct interval format and a UCSC uploaded bed file of genomic intervals. These are both for the Zebrafish Zv9 build and are appropriately labeled this way in their attributes. But when I try to run the tool it says for both the SNP interval file and UCSC bed file: Sequences are not currently available for the specified build. Am I doing something wrong with my formatting or does this tool not yet support Zebrafish Zv9 build? I tried using it in the Human Genome Variation section of the main Galaxy site as well as the Evolution section of the test site and both gave me the same error. Please let me know what is happening. Thank you so much Evan -- Evan Schwab Research Associate Megason Lab Department of Systems Biology Harvard Medical School 200 Longwood Ave Boston, MA 02115 908-938-3779 ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
