Re: [galaxy-user] Question regarding: FASTQ Quality Trimmer

2011-11-28 Thread Daniel Blankenberg
Hi Rahul, This is the maximum number of bases which can have their score not included when calculating the result of the selected aggregation function. For example, if you had a 5 base window with scores of 5,5,2,5 and 5, set aggregation to min score with a specified value of 4, with the

[galaxy-user] Question regarding: FASTQ Quality Trimmer

2011-11-23 Thread Rahul Kanwar
Hello, I am running Galaxy locally and it has been performing flawlessly! I wanted to get more insight about this flag in the FASTQ Quality Trimmer program: Maximum number of bases to exclude from the window during aggregation Does it mean the number of 5' bases to exclude while the doing