Joanne:
1. There is no mechanism for downloading reference sequences from Galaxy at
this time.
2. I am not sure what you mean by 'Tablet'.
3. Megablast tool ('NGS: Mapping - Megablast') will allow you to perform
comparisons against nt, wgs, and htgs databases.
Thanks for using Galaxy,
anton
Hello Jo,
Please see below
On 6/22/11 1:15 PM, Joanne Rampersad wrote:
Hi
I have a few questions
1. I am trying to use Bowtie to map my data using a reference genome.
the genome is available on Galaxy (Escherichia coli DH10B (20079)). Is
there a way that I can download the file in fasta
Link correction:
http://getgalaxy.or/cloud
should be http://usegalaxy.org/cloud
With the two answers from our team to (hopefully) help, we wish the best
for your project,
Jen
Galaxy team
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The Galaxy User list should be used for
Hi
I have a few questions
1. I am trying to use Bowtie to map my data using a reference genome.
the genome is available on Galaxy (Escherichia coli DH10B (20079)). Is
there a way that I can download the file in fasta format to use as a
reference in Tablet?
I can import the SAM output into Tablet
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