Hi Davide,
I think it it is the first - making it so that both samples in any test
would be over this minimum threshold.
Best,
Jen
Galaxy team
On 4/12/13 4:28 AM, Davide Degli Esposti wrote:
Dear Galaxy team,
I am performing a differential expression analysis with a
cufflinks-cuffmerge-cu
Dear Galaxy team,
I am performing a differential expression analysis with a
cufflinks-cuffmerge-cuffdiff workflow. I was wondering if the default value of
10 fragments for min alignment count is intended to exclude from the
significance test all the loci under 10 counts across all samples or if
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